ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4pagB1 - ECOD Domain | ECOD

ECOD/Domains/e4pagB1

e4pagB1

UID: 002050702

PDB

Range: B:170-340
PDB: 4PAG chain B(all domains)
UniProt: D1B4R1 (all domains)
Gene: Sdel_2069

Molecule: Periplasmic binding protein

3D Structure

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Related Domains

Browse other domains in Peripla_BP_2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupChelatase-like(2007.1.14)

FFamilyPeripla_BP_2(2007.1.14.5)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (2-(N-morpholino)ethanesulfonic acid, DI(HYDROXYETHYL)ETHER)

2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814
DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01497Peripla_BP_2

Periplasmic binding protein

ClanCL0043Chelatase

External Links

ECOD PDB View: 4PAG RCSB PDB: 4PAG PDBe: 4PAG UniProt: D1B4R1

Downloads

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