ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5n38A2 - ECOD Domain | ECOD

ECOD/Domains/e5n38A2

e5n38A2

UID: 002067177

PDB

Range: A:228-327
PDB: 5N38 chain A(all domains)
UniProt: O60260 (all domains)
Gene: PRKN

Molecule: E3 ubiquitin-protein ligase parkin,E3 ubiquitin-protein ligase parkin

3D Structure

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Related Domains

Browse other domains in zf-RING_14 →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRING/U-box-like(376)

HH-groupRING/U-box-like(376.1)

TT-groupRING/U-box(376.1.1)

FFamilyzf-RING_14(376.1.1.35)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Zinc ionZN
metal

+ 1 additive (DI(HYDROXYETHYL)ETHER)

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer.

Pfam Families

PF17978zf-RING_14

RING/Ubox like zinc-binding domain

ClanCL0229RING

External Links

ECOD PDB View: 5N38 RCSB PDB: 5N38 PDBe: 5N38 UniProt: O60260

Downloads

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Drug annotations from DrugDomain.