ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5mznA2 - ECOD Domain | ECOD

ECOD/Domains/e5mznA2

e5mznA2

UID: 002073543

RepresentativePDB

Range: A:1177-1287
PDB: 5MZN chain A(all domains)
UniProt: Q00416 (all domains)
Gene: SEN1

Molecule: Helicase SEN1,Helicase SEN1

3D Structure

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Related Domains

Browse other domains in SEN1_barrel →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupAlanine racemase-C(1.1.7)

FFamilySEN1_barrel(1.1.7.81)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Glycerin, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

GlycerinGOL
DrugBank DB09462
1,2-ETHANEDIOLEDO
DI(HYDROXYETHYL)ETHERPEG

Pfam Families

PF23576SEN1_barrel

Helicase SEN1 beta-barrel domain

External Links

ECOD PDB View: 5MZN RCSB PDB: 5MZN PDBe: 5MZN UniProt: Q00416

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.