ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5mznA3 - ECOD Domain | ECOD

ECOD/Domains/e5mznA3

e5mznA3

UID: 002073544

RepresentativePDB

Range: A:1653-1875
PDB: 5MZN chain A(all domains)
UniProt: Q00416 (all domains)
Gene: SEN1

Molecule: Helicase SEN1,Helicase SEN1

3D Structure

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Related Domains

Browse other domains in AAA_12 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyAAA_12(2004.1.1.186)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833

+ 3 additives (1,2-ETHANEDIOL, Glycerol, DI(HYDROXYETHYL)ETHER)

1,2-ETHANEDIOLEDO
GlycerolGOL
DI(HYDROXYETHYL)ETHER

Pfam Families

AAA domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 5MZN RCSB PDB: 5MZN PDBe: 5MZN UniProt: Q00416

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.