ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5nkmC1 - ECOD Domain | ECOD

ECOD/Domains/e5nkmC1

e5nkmC1

UID: 002073546

RepresentativePDB

Range: C:1-254,C:289-332
PDB: 5NKM chain C(all domains)
UniProt: O62301 (all domains)
Gene: smg-8

Molecule: Protein smg-8

3D Structure

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Related Domains

Browse other domains in Smg8_Smg9 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilySmg8_Smg9(2004.1.1.171)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Tromethamine, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

TromethamineTRS
DrugBank DB03754
1,2-ETHANEDIOLEDO
DI(HYDROXYETHYL)ETHERPEG

Pfam Families

PF10220Smg8_Smg9

Smg8_Smg9

External Links

ECOD PDB View: 5NKM RCSB PDB: 5NKM PDBe: 5NKM UniProt: O62301

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.