ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vl1B1 - ECOD Domain | ECOD

ECOD/Domains/e5vl1B1

e5vl1B1

UID: 002074157

PDB

Range: B:8-147
PDB: 5VL1 chain B(all domains)
UniProt: A0PV47 (all domains)
Gene: lysS

Molecule: Lysine--tRNA ligase

3D Structure

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Related Domains

Browse other domains in tRNA_anti-codon →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOB-fold(2)

HH-groupNucleic acid-binding protein(2.1)

TT-groupNucleic acid-binding protein(2.1.1)

FFamilytRNA_anti-codon(2.1.1.15)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (DI(HYDROXYETHYL)ETHER)

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01336tRNA_anti-codon

OB-fold nucleic acid binding domain

ClanCL0021OB

External Links

ECOD PDB View: 5VL1 RCSB PDB: 5VL1 PDBe: 5VL1 UniProt: A0PV47

Downloads

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