ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5x8gC4 - ECOD Domain | ECOD

ECOD/Domains/e5x8gC4

e5x8gC4

UID: 002081567

PDB

Range: C:305-383
PDB: 5X8G chain C(all domains)
UniProt: P23971 (all domains)
Gene: menE

Molecule: 2-succinylbenzoate--CoA ligase

3D Structure

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Related Domains

Browse other domains in AMP-binding →

Classification

AArchitecturebeta barrels(a.1)

XX-groupbeta-barrel domain in acetyl-CoA synthetase-like proteins(4011)

HH-groupbeta-barrel domain in acetyl-CoA synthetase-like proteins(4011.1)

TT-groupbeta-barrel domain in acetyl-CoA synthetase-like proteins(4011.1.1)

FFamilyAMP-binding(4011.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (DI(HYDROXYETHYL)ETHER)

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00501AMP-binding

AMP-binding enzyme

ClanCL0378ANL

External Links

ECOD PDB View: 5X8G RCSB PDB: 5X8G PDBe: 5X8G UniProt: P23971

Downloads

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