ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5mdxd1 - ECOD Domain | ECOD

ECOD/Domains/e5mdxd1

e5mdxd1

UID: 002084622

PDB

Range: d:16-351
PDB: 5MDX chain d(all domains)
UniProt: P56761 (all domains)
Gene: psbD

Molecule: Photosystem II D2 protein

3D Structure

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Related Domains

Browse other domains in Photo_RC →

Classification

AArchitecturealpha bundles(a.7)

XX-groupBacterial photosystem II reaction centre L and M subunits-like(5037)

HH-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1)

TT-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1.1)

FFamilyPhoto_RC(5037.1.1.1)

Ligands

in contact, ≤ 4 Å

Chlorophyll ACLA
drugDrugBank DB02133
FE (II) IONFE2
metal
Pheophytin aPHO

Pfam Families

PF00124Photo_RC

Photosynthetic reaction centre protein

External Links

ECOD PDB View: 5MDX RCSB PDB: 5MDX PDBe: 5MDX UniProt: P56761

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.