ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vysB1 - ECOD Domain | ECOD

ECOD/Domains/e5vysB1

e5vysB1

UID: 002088819

PDB

Range: B:1-246
PDB: 5VYS chain B(all domains)
UniProt: F8WJP6 (all domains)
Gene: wbkC

Molecule: Gdp-mannose 4,6-dehydratase / gdp-4-amino-4,6-dideoxy-d-mannose formyltransferase

3D Structure

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Related Domains

Browse other domains in Formyl_trans_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFormyltransferase(7571)

HH-groupFormyltransferase(7571.1)

TT-groupFormyltransferase(7571.1.1)

FFamilyFormyl_trans_N(7571.1.1.1)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-DiphosphateGDP
drugDrugBank DB04315
GuanosineGMP
drugDrugBank DB02857
N-[4-({[(6R)-2-amino-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid

Pfam Families

PF00551Formyl_trans_N

Formyl transferase

External Links

ECOD PDB View: 5VYS RCSB PDB: 5VYS PDBe: 5VYS UniProt: F8WJP6

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.