ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vmdC1 - ECOD Domain | ECOD

ECOD/Domains/e5vmdC1

e5vmdC1

UID: 002095471

PDB

Range: C:833-901
PDB: 5VMD chain C(all domains)
UniProt: Q86XK2 (all domains)
Gene: FBXO11

Molecule: F-box only protein 11

3D Structure

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Related Domains

Browse other domains in zf-UBR →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupB-box zinc-binding domain-like(904)

HH-groupUBR box(904.2)

TT-groupUBR box(904.2.1)

FFamilyzf-UBR(904.2.1.1)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Putative zinc finger in N-recognin (UBR box)

ClanCL0782BBOX

External Links

ECOD PDB View: 5VMD RCSB PDB: 5VMD PDBe: 5VMD UniProt: Q86XK2

Downloads

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