ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vvlC1 - ECOD Domain | ECOD

ECOD/Domains/e5vvlC1

e5vvlC1

UID: 002098126

PDB

Range: C:15-281
PDB: 5VVL chain C(all domains)
UniProt: Q46896 (all domains)
Gene: ygbT

Molecule: CRISPR-associated endonuclease Cas1

3D Structure

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Related Domains

Browse other domains in Cas_Cas1 →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupCas1(3239)

HH-groupCas1(3239.1)

TT-groupCas1(3239.1.1)

FFamilyCas_Cas1(3239.1.1.1)

Ligands

in contact, ≤ 4 Å

NICKEL (II) IONNI
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01867Cas_Cas1

CRISPR associated protein Cas1

External Links

ECOD PDB View: 5VVL RCSB PDB: 5VVL PDBe: 5VVL UniProt: Q46896

Downloads

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