ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5vvlD1 - ECOD Domain | ECOD

ECOD/Domains/e5vvlD1

e5vvlD1

UID: 002098127

PDB

Range: D:4-276
PDB: 5VVL chain D(all domains)
UniProt: Q46896 (all domains)
Gene: ygbT

Molecule: CRISPR-associated endonuclease Cas1

3D Structure

Loading viewer...

Related Domains

Browse other domains in Cas_Cas1 →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupCas1(3239)

HH-groupCas1(3239.1)

TT-groupCas1(3239.1.1)

FFamilyCas_Cas1(3239.1.1.1)

Ligands

in contact, ≤ 4 Å

NICKEL (II) IONNI
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01867Cas_Cas1

CRISPR associated protein Cas1

External Links

ECOD PDB View: 5VVL RCSB PDB: 5VVL PDBe: 5VVL UniProt: Q46896

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure