ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5nrgG1 - ECOD Domain | ECOD

ECOD/Domains/e5nrgG1

e5nrgG1

UID: 002099557

PDB

Range: G:1-142
PDB: 5NRG chain G(all domains)
UniProt: Q2FW38 (all domains)
Gene: rplM

Molecule: 50S ribosomal protein L13

3D Structure

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Related Domains

Browse other domains in Ribosomal_L13 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRibosomal protein L13/L15p/L18e/L32e(2490)

HH-groupRibosomal protein L13 and L16-A(2490.2)

TT-groupRibosomal protein L13 and L16-A(2490.2.1)

FFamilyRibosomal_L13(2490.2.1.1)

Ligands

in contact, ≤ 4 Å

SpermidineSPD
drugDrugBank DB03566within 5 Å only
Magnesium ionMG
metal
MANGANESE (II) ION

Pfam Families

PF00572Ribosomal_L13

Ribosomal protein L13

External Links

ECOD PDB View: 5NRG RCSB PDB: 5NRG PDBe: 5NRG UniProt: Q2FW38

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.