ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5xnmz1 - ECOD Domain | ECOD

ECOD/Domains/e5xnmz1

e5xnmz1

UID: 002122109

PDB

Range: z:1-62
PDB: 5XNM chain z(all domains)
UniProt: Q32902 (all domains)
Gene: psbZ

Molecule: Photosystem II reaction center protein Z

3D Structure

Loading viewer...

Related Domains

Browse other domains in Ycf9 →

Classification

AArchitectureextended segments(a.20)

XX-groupPsbZ-like(5044)

HH-groupPsbZ-like(5044.1)

TT-groupPsbZ-like(5044.1.1)

FFamilyYcf9(5044.1.1.1)

Ligands

in contact, ≤ 4 Å

Beta caroteneBCR
drugDrugBank DB06755
1,2-Dipalmitoyl-Phosphatidyl-GlyceroleLHG
drugDrugBank DB02043

Pfam Families

YCF9

External Links

ECOD PDB View: 5XNM RCSB PDB: 5XNM PDBe: 5XNM UniProt: Q32902

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Chlorophyll a

1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDELMG

Shown in the structure viewer. Drug annotations from DrugDomain.