ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5n4hA2 - ECOD Domain | ECOD

ECOD/Domains/e5n4hA2

e5n4hA2

UID: 002130295

PDB

Range: A:179-303
PDB: 5N4H chain A(all domains)
UniProt: Q62165 (all domains)
Gene: Dag1

Molecule: Dystroglycan

3D Structure

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Related Domains

Browse other domains in a_DG1_N2 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupTRADD, N-terminal domain/Dystroglycan, domain 2(304.49)

TT-groupTRADD, N-terminal domain/Dystroglycan, domain 2(304.49.1)

FFamilya_DG1_N2(304.49.1.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

1,2-ETHANEDIOLEDO
DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF18424a_DG1_N2

Alpha-Dystroglycan N-terminal domain 2

ClanCL0960HD_NOTCH-like

External Links

ECOD PDB View: 5N4H RCSB PDB: 5N4H PDBe: 5N4H UniProt: Q62165

Downloads

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