ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6b9dA1 - ECOD Domain | ECOD

ECOD/Domains/e6b9dA1

e6b9dA1

UID: 002147473

PDB

Range: A:29-344
PDB: 6B9D chain A(all domains)
UniProt: Q8WXF7 (all domains)
Gene: ATL1

Molecule: Atlastin-1

3D Structure

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Related Domains

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Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyGBP(2004.1.1.81)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-DiphosphateGDP
drugDrugBank DB04315
Magnesium ionMG
metal

+ 1 additive (Glycerin)

Pfam Families

Guanylate-binding protein, N-terminal domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 6B9D RCSB PDB: 6B9D PDBe: 6B9D UniProt: Q8WXF7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerinGOL

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.