ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5wgkA1 - ECOD Domain | ECOD

ECOD/Domains/e5wgkA1

e5wgkA1

UID: 002148492

PDB

Range: A:442-798
PDB: 5WGK chain A(all domains)
UniProt: F8W4B7 (all domains)
Gene: hdac6

Molecule: Hdac6 protein

3D Structure

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Related Domains

Browse other domains in Hist_deacetyl →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupArginase/deacetylase(2006.1.5)

FFamilyHist_deacetyl(2006.1.5.2)

Ligands

in contact, ≤ 4 Å

N-hydroxy-4-{[(2-hydroxyethyl)(phenylacetyl)amino]methyl}benzamideAGJ
Iodide ionIOD
Potassium ionK

Pfam Families

PF00850Hist_deacetyl

Histone deacetylase domain

ClanCL0302Arginase

External Links

ECOD PDB View: 5WGK RCSB PDB: 5WGK PDBe: 5WGK UniProt: F8W4B7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Zinc ionZN

metal

+ 2 additives (1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

1,2-ETHANEDIOLEDO
DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.