ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5otcA1 - ECOD Domain | ECOD

ECOD/Domains/e5otcA1

e5otcA1

UID: 002153185

PDB

Range: A:28-114,A:238-283
PDB: 5OTC chain A(all domains)
UniProt: P35120 (all domains)
Gene: nocT

Molecule: Nopaline-binding periplasmic protein

3D Structure

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Related Domains

Browse other domains in SBP_bac_3 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_3(7523.1.1.4)

Ligands

in contact, ≤ 4 Å

(2~{S})-5-azanyl-2-(2-hydroxy-2-oxoethylamino)pentanoic acidAQK
Chloride ionCL

+ 3 additives (Triethylene glycol, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

Triethylene glycolPGE

Pfam Families

PF00497SBP_bac_3

Bacterial extracellular solute-binding proteins, family 3

ClanCL0177PBP

External Links

ECOD PDB View: 5OTC RCSB PDB: 5OTC PDBe: 5OTC UniProt: P35120

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB02327

1,2-ETHANEDIOLEDO

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.