ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ydkC1 - ECOD Domain | ECOD

ECOD/Domains/e5ydkC1

e5ydkC1

UID: 002167512

PDB

Range: C:1-73
PDB: 5YDK chain C(all domains)
UniProt: P62979 (all domains)
Gene: RPS27A

Molecule: Ubiquitin-40S ribosomal protein S27a

3D Structure

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Related Domains

Browse other domains in ubiquitin →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupUbiquitin-related(221.1)

TT-groupUbiquitin-like(221.1.1)

FFamilyubiquitin(221.1.1.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00240ubiquitin

Ubiquitin family

ClanCL0072Ubiquitin

External Links

ECOD PDB View: 5YDK RCSB PDB: 5YDK PDBe: 5YDK UniProt: P62979

Downloads

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