ECODEvolutionary Classification of Protein Domains

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PDB 5YDK

X-RAY DIFFRACTION2.50 Å12 chains8 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain BUbiquitin-40S ribosomal protein S27aview chain

1 domain

e5ydkB1(B:1-76)

Chain CUbiquitin-40S ribosomal protein S27aview chain

1 domain

e5ydkC1(C:1-73)

Chain DUbiquitin-40S ribosomal protein S27aview chain

1 domain

e5ydkD1(D:1-75)

Chain EUbiquitin-40S ribosomal protein S27aview chain

1 domain

e5ydkE1(E:1-76)

Chain HUbiquitin-40S ribosomal protein S27aview chain

1 domain

e5ydkH1(H:1-76)

Chain IUbiquitin-40S ribosomal protein S27aview chain

1 domain

e5ydkI1(I:1-73)

Chain JUbiquitin-40S ribosomal protein S27aview chain

1 domain

e5ydkJ1(J:1-73)

Chain KUbiquitin-40S ribosomal protein S27aview chain

1 domain

e5ydkK1(K:1-76)

All Domains (8)

#	Chain	Domain ID	Range	Family	Classification
1	B	e5ydkB1	B:1-76	ubiquitin	221 → 221.1 → 221.1.1
2	C	e5ydkC1	C:1-73	ubiquitin	221 → 221.1 → 221.1.1
3	D	e5ydkD1	D:1-75	ubiquitin	221 → 221.1 → 221.1.1
4	E	e5ydkE1	E:1-76	ubiquitin	221 → 221.1 → 221.1.1
5	H	e5ydkH1	H:1-76	ubiquitin	221 → 221.1 → 221.1.1
6	I	e5ydkI1	I:1-73	ubiquitin	221 → 221.1 → 221.1.1
7	J	e5ydkJ1	J:1-73	ubiquitin	221 → 221.1 → 221.1.1
8	K	e5ydkK1	K:1-76	ubiquitin	221 → 221.1 → 221.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors