ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4h2eA1 - ECOD Domain | ECOD

ECOD/Domains/e4h2eA1

e4h2eA1

UID: 000224992

PDB

Range: A:106-269
PDB: 4H2E chain A(all domains)
UniProt: P14780 (all domains)
Gene: MMP9

Molecule: Matrix metalloproteinase-9

3D Structure

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Related Domains

Browse other domains in Peptidase_M10 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M10(2498.1.1.1)

Ligands

in contact, ≤ 4 Å

BicineBCN
drugDrugBank DB03709
N,N'-bis(4-{[(3R)-3-[(biphenyl-4-ylsulfonyl)(propan-2-yloxy)amino]-4-(hydroxyamino)-4-oxobutyl]amino}-4-oxobutyl)benzene-1,3-dicarboxamide0Y3
Calcium ion

Pfam Families

PF00413Peptidase_M10

Matrixin

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 4H2E RCSB PDB: 4H2E PDBe: 4H2E UniProt: P14780

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Zinc ionZN

metal

+ 2 additives (Acetate, DI(HYDROXYETHYL)ETHER)

AcetateACT
DrugBank DB14511within 5 Å only
DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.