ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5vk0W1 - ECOD Domain | ECOD

ECOD/Domains/e5vk0W1

e5vk0W1

UID: 002327531

PDB

Range: W:25-108
PDB: 5VK0 chain W(all domains)
UniProt: Q00987 (all domains)
Gene: MDM2

Molecule: E3 ubiquitin-protein ligase Mdm2

3D Structure

Loading viewer...

Related Domains

Browse other domains in SWIB →

Classification

AArchitecturealpha arrays(a.6)

XX-groupSWIB/MDM2 domain(178)

HH-groupSWIB/MDM2 domain(178.1)

TT-groupSWIB/MDM2 domain(178.1.1)

FFamilySWIB(178.1.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

SWIB/MDM2 domain

ClanCL0906SWIB

External Links

ECOD PDB View: 5VK0 RCSB PDB: 5VK0 PDBe: 5VK0 UniProt: Q00987

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure