ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5xtvA1 - ECOD Domain | ECOD

ECOD/Domains/e5xtvA1

e5xtvA1

UID: 002327668

PDB

Range: A:3-334
PDB: 5XTV chain A(all domains)
UniProt: P34736 (all domains)
Gene: TKT

Molecule: Transketolase

3D Structure

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Related Domains

Browse other domains in Transketolase_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupThiamin diphosphate-binding fold (THDP-binding)(7574)

HH-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1)

TT-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1.1)

FFamilyTransketolase_N(7574.1.1.1)

Ligands

in contact, ≤ 4 Å

2-[(5S)-3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methylidene-1,3-thiazolidin-5-yl]ethyl phosphono hydrogen phosphate8EF
Calcium ionCA
metal

+ 1 additive (DI(HYDROXYETHYL)ETHER)

DI(HYDROXYETHYL)ETHER

Pfam Families

PF00456Transketolase_N

Transketolase, thiamine diphosphate binding domain

ClanCL0254THDP-binding

External Links

ECOD PDB View: 5XTV RCSB PDB: 5XTV PDBe: 5XTV UniProt: P34736

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.