ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6fgeA1 - ECOD Domain | ECOD

ECOD/Domains/e6fgeA1

e6fgeA1

UID: 002387872

RepresentativePDB

Range: A:268-578
PDB: 6FGE chain A(all domains)
UniProt: Q96AP4 (all domains)
Gene: ZUP1

Molecule: Zinc finger with UFM1-specific peptidase domain protein

3D Structure

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Related Domains

Browse other domains in Peptidase_C78 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupCysteine proteinases-like(219)

HH-groupCysteine proteinases(219.1)

TT-groupCysteine proteinases(219.1.1)

FFamilyPeptidase_C78(219.1.1.41)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 7 additives (Acetate, Formic acid, Glycerin, …)

AcetateACT
DrugBank DB14511
Formic acidFMT
DrugBank DB01942
Glycerin

Pfam Families

PF07910Peptidase_C78

Peptidase family C78

ClanCL0125Peptidase_CA

External Links

ECOD PDB View: 6FGE RCSB PDB: 6FGE PDBe: 6FGE UniProt: Q96AP4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Malonate IonMLI

DrugBank DB02201

1,2-ETHANEDIOLEDO

Ammonium ionNH4

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.