ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6dxhA1 - ECOD Domain | ECOD

ECOD/Domains/e6dxhA1

e6dxhA1

UID: 002389809

PDB

Range: A:173-289
PDB: 6DXH chain A(all domains)
UniProt: P45974 (all domains)
Gene: USP5

Molecule: Ubiquitin carboxyl-terminal hydrolase 5

3D Structure

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Related Domains

Browse other domains in zf-UBP →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRING/U-box-like(376)

HH-groupRING/U-box-like(376.1)

TT-groupRING/U-box(376.1.1)

FFamilyzf-UBP(376.1.1.5)

Ligands

in contact, ≤ 4 Å

4-(4-tert-butylphenyl)-4-oxobutanoic acidHH4
Unknown atom or ionUNX
Zinc ionZN

Pfam Families

Zn-finger in ubiquitin-hydrolases and other protein

ClanCL0229RING

External Links

ECOD PDB View: 6DXH RCSB PDB: 6DXH PDBe: 6DXH UniProt: P45974

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.