ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5y6lC1 - ECOD Domain | ECOD

ECOD/Domains/e5y6lC1

e5y6lC1

UID: 002390780

PDB

Range: C:2-171
PDB: 5Y6L chain C(all domains)
UniProt: P07814 (all domains)
Gene: EPRS1

Molecule: Bifunctional glutamate/proline--tRNA ligase

3D Structure

Loading viewer...

Related Domains

Browse other domains in Arc1p_N_like →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupGlutathione S-transferase (GST)-C(109.1)

TT-groupGlutathione S-transferase (GST)-C(109.1.1)

FFamilyArc1p_N_like(109.1.1.11)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF21972Arc1p_N_like

Nuclear-export cofactor Arc1p

ClanCL0497GST_C

External Links

ECOD PDB View: 5Y6L RCSB PDB: 5Y6L PDBe: 5Y6L UniProt: P07814

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure