ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6bfgB1 - ECOD Domain | ECOD

ECOD/Domains/e6bfgB1

e6bfgB1

UID: 002396192

PDB

Range: B:3-375
PDB: 6BFG chain B(all domains)
UniProt: P20932 (all domains)
Gene: mdlB

Molecule: (S)-mandelate dehydrogenase

3D Structure

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Related Domains

Browse other domains in FMN_dh →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyFMN_dh(2002.1.1.48)

Ligands

in contact, ≤ 4 Å

Flavin mononucleotideFMN
drugDrugBank DB03247
Sodium ionNA
metal

+ 5 additives (Glycerin, Phosphate ion, 1,2-ETHANEDIOL, …)

GlycerinGOL

Pfam Families

FMN-dependent dehydrogenase

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 6BFG RCSB PDB: 6BFG PDBe: 6BFG UniProt: P20932

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Phosphate ionPO4

DrugBank DB14523

1,2-ETHANEDIOLEDO

Dodecyl-beta-d-maltosideLMT

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.