ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6dxtA1 - ECOD Domain | ECOD

ECOD/Domains/e6dxtA1

e6dxtA1

UID: 002399668

PDB

Range: A:173-284
PDB: 6DXT chain A(all domains)
UniProt: P45974 (all domains)
Gene: USP5

Molecule: Ubiquitin carboxyl-terminal hydrolase 5

3D Structure

Loading viewer...

Related Domains

Browse other domains in zf-UBP →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRING/U-box-like(376)

HH-groupRING/U-box-like(376.1)

TT-groupRING/U-box(376.1.1)

FFamilyzf-UBP(376.1.1.5)

Ligands

in contact, ≤ 4 Å

3-(5-phenyl-1,3,4-oxadiazol-2-yl)propanoic acidHHY
Unknown atom or ionUNX
Zinc ionZN

Pfam Families

Zn-finger in ubiquitin-hydrolases and other protein

ClanCL0229RING

External Links

ECOD PDB View: 6DXT RCSB PDB: 6DXT PDBe: 6DXT UniProt: P45974

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Shown in the structure viewer. Drug annotations from DrugDomain.