ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5o6yB1 - ECOD Domain | ECOD

ECOD/Domains/e5o6yB1

e5o6yB1

UID: 002404628

PDB

Range: B:53-266
PDB: 5O6Y chain B(all domains)
UniProt: Q81EK9 (all domains)
Gene: BC_1960

Molecule: Peptidoglycan N-acetylglucosamine deacetylase

3D Structure

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Related Domains

Browse other domains in Polysacc_deac_1 →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupGlycoside hydrolase/deacetylase(2002.3)

TT-groupGlycoside hydrolase/deacetylase(2002.3.1)

FFamilyPolysacc_deac_1(2002.3.1.2)

Ligands

in contact, ≤ 4 Å

4-naphthalen-1-yl-~{N}-oxidanyl-benzamide5YA
Chloride ionCL
Sodium ionNA
metal
Zinc ionZN

Pfam Families

PF01522Polysacc_deac_1

Polysaccharide deacetylase

ClanCL0158GH_CE

External Links

ECOD PDB View: 5O6Y RCSB PDB: 5O6Y PDBe: 5O6Y UniProt: Q81EK9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 4 additives (Dimethyl sulfoxide, Sulfate ion, DI(HYDROXYETHYL)ETHER, …)

Dimethyl sulfoxideDMS
DrugBank DB01093
Sulfate ionSO4
DrugBank DB14546
DI(HYDROXYETHYL)ETHERPEG
3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOLPE3
within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.