ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6bsrA2 - ECOD Domain | ECOD

ECOD/Domains/e6bsrA2

e6bsrA2

UID: 002411958

PDB

Range: A:420-543
PDB: 6BSR chain A(all domains)
UniProt: Q9K3C9 (all domains)
Gene: pbp4

Molecule: PBP4 protein

3D Structure

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Related Domains

Browse other domains in Transpeptidase →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019)

HH-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1)

TT-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1.1)

FFamilyTranspeptidase(4019.1.1.3)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Open form - penicillin gPNM
within 5 Å only

+ 2 additives (Glycerol, DI(HYDROXYETHYL)ETHER)

GlycerolGOL

Pfam Families

PF00905Transpeptidase

Penicillin binding protein transpeptidase domain

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 6BSR RCSB PDB: 6BSR PDBe: 6BSR UniProt: Q9K3C9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.