ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6ivvA1 - ECOD Domain | ECOD

ECOD/Domains/e6ivvA1

e6ivvA1

UID: 002429332

PDB

Range: A:-2-193
PDB: 6IVV chain A(all domains)
UniProt: D0C9L6 (all domains)
Gene: pth

Molecule: Peptidyl-tRNA hydrolase

3D Structure

Loading viewer...

Related Domains

Browse other domains in Pept_tRNA_hydro →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPhosphorylase/hydrolase-like(2011)

HH-groupPeptidyl-tRNA hydrolase-like(2011.2)

TT-groupPeptidyl-tRNA hydrolase-like(2011.2.1)

FFamilyPept_tRNA_hydro(2011.2.1.3)

Ligands

in contact, ≤ 4 Å

Chloride ionCL

+ 2 additives (1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

1,2-ETHANEDIOLEDO
DI(HYDROXYETHYL)ETHERPEG

Pfam Families

PF01195Pept_tRNA_hydro

Peptidyl-tRNA hydrolase

ClanCL0408PUP

External Links

ECOD PDB View: 6IVV RCSB PDB: 6IVV PDBe: 6IVV UniProt: D0C9L6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Shown in the structure viewer. Drug annotations from DrugDomain.