ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6g5gB2 - ECOD Domain | ECOD

ECOD/Domains/e6g5gB2

e6g5gB2

UID: 002442586

PDB

Range: B:860-1080
PDB: 6G5G chain B(all domains)
UniProt: P10844 (all domains)
Gene: botB

Molecule: Botulinum neurotoxin type B

3D Structure

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Related Domains

Browse other domains in Toxin_R_bind_N →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupConcanavalin A-like(10.1)

TT-groupConcanavalin A-like lectins/glucanases(10.1.1)

FFamilyToxin_R_bind_N(10.1.1.25)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerol, DI(HYDROXYETHYL)ETHER)

GlycerolGOL
DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF07953Toxin_R_bind_N

Clostridium neurotoxin, N-terminal receptor binding

ClanCL0004Concanavalin

External Links

ECOD PDB View: 6G5G RCSB PDB: 6G5G PDBe: 6G5G UniProt: P10844

Downloads

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