ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6npnB1 - ECOD Domain | ECOD

ECOD/Domains/e6npnB1

e6npnB1

UID: 002452417

PDB

Range: B:24-341
PDB: 6NPN chain B(all domains)
UniProt: Q99986 (all domains)
Gene: VRK1

Molecule: Serine/threonine-protein kinase VRK1

3D Structure

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Related Domains

Browse other domains in Pkinase →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupProtein kinase(206.1.1)

FFamilyPkinase(206.1.1.1)

Ligands

in contact, ≤ 4 Å

(7R)-7-methyl-2-[(3-oxo-2,3-dihydro-1H-indazol-6-yl)amino]-5,8-di(prop-2-yn-1-yl)-7,8-dihydropteridin-6(5H)-oneKWJ

+ 3 additives (Sulfate ion, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

Sulfate ionSO4
DrugBank DB14546
1,2-ETHANEDIOL

Pfam Families

PF00069Pkinase

Protein kinase domain

ClanCL0016PKinase

External Links

ECOD PDB View: 6NPN RCSB PDB: 6NPN PDBe: 6NPN UniProt: Q99986

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.