ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6iyvA2 - ECOD Domain | ECOD

ECOD/Domains/e6iyvA2

e6iyvA2

UID: 002453161

PDB

Range: A:141-233
PDB: 6IYV chain A(all domains)
UniProt: I6Y9J2 (all domains)
Gene: ldtB

Molecule: L,D-transpeptidase 2

3D Structure

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Related Domains

Browse other domains in Big_10 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyBig_10(11.1.1.250)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Tromethamine, Glycerol, DI(HYDROXYETHYL)ETHER)

TromethamineTRS
DrugBank DB03754
GlycerolGOL
DI(HYDROXYETHYL)ETHERPEG

Pfam Families

Bacterial Ig domain

ClanCL0159E-set

External Links

ECOD PDB View: 6IYV RCSB PDB: 6IYV PDBe: 6IYV UniProt: I6Y9J2

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.