ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6qidA2 - ECOD Domain | ECOD

ECOD/Domains/e6qidA2

e6qidA2

UID: 002455727

PDB

Range: A:458-527
PDB: 6QID chain A(all domains)
UniProt: G0RY84 (all domains)
Gene: CTHT_0005780

Molecule: Prp43

3D Structure

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Related Domains

Browse other domains in HA2_N →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupwinged helix domain(101.1.2)

FFamilyHA2_N(101.1.2.60)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives ((4r)-2-Methylpentane-2,4-Diol, Sulfate ion, DI(HYDROXYETHYL)ETHER)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564
Sulfate ionSO4
DrugBank DB14546
DI(HYDROXYETHYL)ETHER

Pfam Families

PF04408WHD_HA2

Helicase associated domain (HA2), winged-helix

ClanCL0123HTH

External Links

ECOD PDB View: 6QID RCSB PDB: 6QID PDBe: 6QID UniProt: G0RY84

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.