ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6h80A1 - ECOD Domain | ECOD

ECOD/Domains/e6h80A1

e6h80A1

UID: 002458415

PDB

Range: A:272-680
PDB: 6H80 chain A(all domains)
UniProt: Q6YMS4 (all domains)
Gene: pol

Molecule: Genome polyprotein

3D Structure

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Related Domains

Browse other domains in Flavi_NS5 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyFlavi_NS5(304.48.1.13)

Ligands

in contact, ≤ 4 Å

2-(4-methoxy-3-thiophen-2-yl-phenyl)ethanoic acid5V5
Zinc ionZN
metal

+ 1 additive (DI(HYDROXYETHYL)ETHER)

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00972Flavi_NS5

Flavivirus RNA-directed RNA polymerase, fingers and palm domains

ClanCL0027RdRP

External Links

ECOD PDB View: 6H80 RCSB PDB: 6H80 PDBe: 6H80 UniProt: Q6YMS4

Downloads

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