ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5tefA1 - ECOD Domain | ECOD

ECOD/Domains/e5tefA1

e5tefA1

UID: 002462929

PDB

Range: A:3-209,A:240-385
PDB: 5TEF chain A(all domains)
UniProt: Q8TEQ6 (all domains)
Gene: GEMIN5

Molecule: Gem-associated protein 5

3D Structure

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Related Domains

Browse other domains in WD40, Beta-prop_RIG_1st →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupbeta-propeller-like(5)

HH-groupbeta-propeller(5.1)

TT-group7-bladed(5.1.4)

FFamilyWD40, Beta-prop_RIG_1st(5.1.4.290)

Ligands

in contact, ≤ 4 Å

7-methyl-guanosine-5'-triphosphate-5'-guanosineGTG
drugDrugBank DB03958
Unknown atom or ionUNX

+ 1 additive (Glycerin)

Glycerin

Pfam Families

WD domain, G-beta repeat

ClanCL0186Beta_propeller

PF23770Beta-prop_RIG_1st

RIG first beta-propeller

ClanCL0186Beta_propeller

External Links

ECOD PDB View: 5TEF RCSB PDB: 5TEF PDBe: 5TEF UniProt: Q8TEQ6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.