ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6mjpB1 - ECOD Domain | ECOD

ECOD/Domains/e6mjpB1

e6mjpB1

UID: 002465546

PDB

Range: B:2-241
PDB: 6MJP chain B(all domains)
UniProt: O30650 (all domains)
Gene: lptB

Molecule: ABC transporter ATP-binding protein

3D Structure

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Related Domains

Browse other domains in ABC_tran,BCA_ABC_TP_C →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyABC_tran,BCA_ABC_TP_C(2004.1.1.7)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Chloride ionCL
6-cyclohexylhexyl beta-D-glucopyranosideJU7

Pfam Families

PF00005ABC_tran

ABC transporter

ClanCL0023P-loop_NTPase

PF12399BCA_ABC_TP_C

Branched-chain amino acid ATP-binding cassette transporter

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 6MJP RCSB PDB: 6MJP PDBe: 6MJP UniProt: O30650

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 3 additives (Glycerin, DI(HYDROXYETHYL)ETHER, Tetraethylene glycol)

GlycerinGOL
DrugBank DB09462
DI(HYDROXYETHYL)ETHERPEG
Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.