ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6hcuB1 - ECOD Domain | ECOD

ECOD/Domains/e6hcuB1

e6hcuB1

UID: 002467961

PDB

Range: B:223-582
PDB: 6HCU chain B(all domains)
UniProt: Q8IDJ8 (all domains)
Gene: PF3D7_1350100

Molecule: Lysine--tRNA ligase

3D Structure

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Related Domains

Browse other domains in tRNA-synt_2 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupClass II aaRS and biotin synthetases(314)

HH-groupClass II aaRS and biotin synthetases(314.1)

TT-groupClass II aaRS and biotin synthetases(314.1.1)

FFamilytRNA-synt_2(314.1.1.1)

Ligands

in contact, ≤ 4 Å

LysineLYS
drugDrugBank DB00123within 5 Å only
~{N}-[[4,4-bis(fluoranyl)-1-oxidanyl-cyclohexyl]methyl]-6-fluoranyl-4-oxidanylidene-chromene-2-carboxamideFYB

+ 2 additives (Tromethamine, DI(HYDROXYETHYL)ETHER)

Pfam Families

PF00152tRNA-synt_2

tRNA synthetases class II (D, K and N)

ClanCL0040tRNA_synt_II

External Links

ECOD PDB View: 6HCU RCSB PDB: 6HCU PDBe: 6HCU UniProt: Q8IDJ8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

TromethamineTRS

DrugBank DB03754

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.