ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6cx5A2 - ECOD Domain | ECOD

ECOD/Domains/e6cx5A2

e6cx5A2

UID: 002470442

PDB

Range: A:7-185
PDB: 6CX5 chain A(all domains)
UniProt: P11609 (all domains)
Gene: Cd1d1

Molecule: Antigen-presenting glycoprotein CD1d1

3D Structure

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Related Domains

Browse other domains in MHC_I_3 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupMHC antigen-recognition domain(233)

HH-groupMHC antigen-recognition domain(233.1)

TT-groupMHC antigen-recognition domain(233.1.1)

FFamilyMHC_I_3(233.1.1.6)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
Palmitic AcidPLM
drugDrugBank DB03796

Pfam Families

PF16497MHC_I_3

MHC-I family domain

ClanCL0343MHC

External Links

ECOD PDB View: 6CX5 RCSB PDB: 6CX5 PDBe: 6CX5 UniProt: P11609

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(5R,6S,7S)-5,6-dihydroxy-7-(octanoylamino)-N-(8-phenyloctyl)-8-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]oxy}octanamide (non-preferred name)

Sodium ionNA

metal

Shown in the structure viewer. Drug annotations from DrugDomain.