ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6fdiD1 - ECOD Domain | ECOD

ECOD/Domains/e6fdiD1

e6fdiD1

UID: 002470585

PDB

Range: D:88-411
PDB: 6FDI chain D(all domains)
UniProt: Q08499 (all domains)
Gene: PDE4D

Molecule: cAMP-specific 3',5'-cyclic phosphodiesterase 4D

3D Structure

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Related Domains

Browse other domains in PDEase_I →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupPDEase-like(131)

HH-groupHD-domain/PDEase-like(131.1)

TT-groupHD-domain/PDEase-like(131.1.1)

FFamilyPDEase_I(131.1.1.1)

Ligands

in contact, ≤ 4 Å

1-[2-[4-[(4~{a}~{S},8~{a}~{R})-4-(3,4-dimethoxyphenyl)-1-oxidanylidene-4~{a},5,8,8~{a}-tetrahydrophthalazin-2-yl]piperidin-1-yl]-2-oxidanylidene-ethyl]-4,4-dimethyl-piperidine-2,6-dioneD5T
Magnesium ionMG
metal
Zinc ion

Pfam Families

PF00233PDEase_I

3'5'-cyclic nucleotide phosphodiesterase

ClanCL0237HD_PDEase

External Links

ECOD PDB View: 6FDI RCSB PDB: 6FDI PDBe: 6FDI UniProt: Q08499

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 3 additives (1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Tetraethylene glycol)

1,2-ETHANEDIOLEDO
DI(HYDROXYETHYL)ETHERPEG
Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.