ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5w4dD1 - ECOD Domain | ECOD

ECOD/Domains/e5w4dD1

e5w4dD1

UID: 002486888

PDB

Range: D:4-215
PDB: 5W4D chain D(all domains)
UniProt: A0A2H2IB89 (all domains)

Molecule: P-granule scaffold protein

3D Structure

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Related Domains

Browse other domains in PGL_N →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupN-terminal domain of P-granule protein(7030)

HH-groupN-terminal domain of P-granule protein(7030.1)

TT-groupN-terminal domain of P-granule protein(7030.1.1)

FFamilyPGL_N(7030.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 4 additives (Imidazole, Triethylene glycol, 1,2-ETHANEDIOL, …)

ImidazoleIMD
DrugBank DB03366
Triethylene glycolPGE
DrugBank DB02327
1,2-ETHANEDIOL

Pfam Families

P granule abnormality protein N-terminal domain

External Links

ECOD PDB View: 5W4D RCSB PDB: 5W4D PDBe: 5W4D UniProt: A0A2H2IB89

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.