ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6nw9B1 - ECOD Domain | ECOD

ECOD/Domains/e6nw9B1

e6nw9B1

UID: 002496586

PDB

Range: B:176-628
PDB: 6NW9 chain B(all domains)
UniProt: G3M191 (all domains)
Gene: orf212

Molecule: Tailspike protein

3D Structure

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Related Domains

Browse other domains in Beta_helix →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded right-handed beta-helix(207)

HH-groupPectin lyase-like(207.2)

TT-groupPectin lyase-like(207.2.1)

FFamilyBeta_helix(207.2.1.22)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Sodium ionNA
metal

+ 5 additives (Carbonate ion, Glycerin, Phosphate ion, …)

Carbonate ionCO3

Pfam Families

PF13229Beta_helix

Right handed beta helix region

ClanCL0268Pec_lyase-like

External Links

ECOD PDB View: 6NW9 RCSB PDB: 6NW9 PDBe: 6NW9 UniProt: G3M191

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14531

GlycerinGOL

DrugBank DB09462

Phosphate ionPO4

DrugBank DB14523

1,2-ETHANEDIOLEDO

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.