ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6o65E1 - ECOD Domain | ECOD

ECOD/Domains/e6o65E1

e6o65E1

UID: 002496623

PDB

Range: E:102-331
PDB: 6O65 chain E(all domains)
UniProt: Q9ZUB3 (all domains)
Gene: SPDSYN1

Molecule: Spermidine synthase 1

3D Structure

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Related Domains

Browse other domains in Spermine_synth →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilySpermine_synth(2003.1.5.13)

Ligands

in contact, ≤ 4 Å

Cyclohexylammonium IonHAI
drugDrugBank DB02995
5'-[(S)-(3-AMINOPROPYL)(METHYL)-LAMBDA~4~-SULFANYL]-5'-DEOXYADENOSINES4M

+ 2 additives (Sulfate ion, DI(HYDROXYETHYL)ETHER)

Pfam Families

PF01564Spermine_synth

Spermine/spermidine synthase domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 6O65 RCSB PDB: 6O65 PDBe: 6O65 UniProt: Q9ZUB3

Downloads

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Sulfate ion

DrugBank DB14546

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.