ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6o65E2 - ECOD Domain | ECOD

ECOD/Domains/e6o65E2

e6o65E2

UID: 002496624

PDB

Range: E:35-101
PDB: 6O65 chain E(all domains)
UniProt: Q9ZUB3 (all domains)
Gene: SPDSYN1

Molecule: Spermidine synthase 1

3D Structure

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Related Domains

Browse other domains in Spermine_synt_N →

Classification

AArchitecturebeta meanders(a.2)

XX-groupSpermidine synthase tetramerisation domain(3699)

HH-groupSpermidine synthase tetramerisation domain(3699.1)

TT-groupSpermidine synthase tetramerisation domain(3699.1.1)

FFamilySpermine_synt_N(3699.1.1.1)

Ligands

in contact, ≤ 4 Å

Cyclohexylammonium IonHAI
drugDrugBank DB02995
5'-[(S)-(3-AMINOPROPYL)(METHYL)-LAMBDA~4~-SULFANYL]-5'-DEOXYADENOSINES4M

+ 1 additive (DI(HYDROXYETHYL)ETHER)

Pfam Families

PF17284Spermine_synt_N

Spermidine synthase tetramerisation domain

External Links

ECOD PDB View: 6O65 RCSB PDB: 6O65 PDBe: 6O65 UniProt: Q9ZUB3

Downloads

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DI(HYDROXYETHYL)ETHER

Shown in the structure viewer. Drug annotations from DrugDomain.