ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6p55B2 - ECOD Domain | ECOD

ECOD/Domains/e6p55B2

e6p55B2

UID: 002522044

PDB

Range: B:234-299,B:406-574
PDB: 6P55 chain B(all domains)
UniProt: P08149 (all domains)
Gene: penA

Molecule: peptidoglycan D,D-transpeptidase PenA

3D Structure

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Related Domains

Browse other domains in Transpeptidase →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyTranspeptidase(223.3.1.3)

Ligands

in contact, ≤ 4 Å

cefixime, bound formNZM

+ 2 additives (DI(HYDROXYETHYL)ETHER, Phosphate ion)

DI(HYDROXYETHYL)ETHERPEG
Phosphate ionPO4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00905Transpeptidase

Penicillin binding protein transpeptidase domain

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 6P55 RCSB PDB: 6P55 PDBe: 6P55 UniProt: P08149

Downloads

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