ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6qvgB2 - ECOD Domain | ECOD

ECOD/Domains/e6qvgB2

e6qvgB2

UID: 002537605

PDB

Range: B:43-344
PDB: 6QVG chain B(all domains)
UniProt: P34897 (all domains)
Gene: SHMT2

Molecule: Serine hydroxymethyltransferase, mitochondrial

3D Structure

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Related Domains

Browse other domains in SHMT →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPLP-dependent transferases(7577)

HH-groupPLP-dependent transferases(7577.1)

TT-groupPLP-dependent transferases(7577.1.1)

FFamilySHMT(7577.1.1.5)

Ligands

in contact, ≤ 4 Å

LometrexolDDF
drugDrugBank DB12769
GlycineGLY
drugDrugBank DB00145
Pyridoxal phosphate

Pfam Families

Serine hydroxymethyltransferase

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 6QVG RCSB PDB: 6QVG PDBe: 6QVG UniProt: P34897

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB00114

Sodium ionNA

metal

+ 2 additives (Glycerin, DI(HYDROXYETHYL)ETHER)

GlycerinGOL
DrugBank DB09462
DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.