ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6jloJ1 - ECOD Domain | ECOD

ECOD/Domains/e6jloJ1

e6jloJ1

UID: 002544845

PDB

Range: J:2-39
PDB: 6JLO chain J(all domains)
UniProt: Q7DGD4 (all domains)
Gene: psbJ

Molecule: Photosystem II reaction center protein J

3D Structure

Loading viewer...

Related Domains

Browse other domains in PsbJ →

Classification

AArchitectureextended segments(a.20)

XX-groupPhotosystem II reaction center protein J, PsbJ(5031)

HH-groupPhotosystem II reaction center protein J, PsbJ(5031.1)

TT-groupPhotosystem II reaction center protein J, PsbJ(5031.1.1)

FFamilyPsbJ(5031.1.1.1)

Ligands

in contact, ≤ 4 Å

Beta caroteneBCR
drugDrugBank DB06755
Digalactosyl Diacyl Glycerol (Dgdg)DGD
drugDrugBank DB03426

Pfam Families

PsbJ

External Links

ECOD PDB View: 6JLO RCSB PDB: 6JLO PDBe: 6JLO UniProt: Q7DGD4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE

Magnesium ionMG

metal

1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLSQD

Unknown ligandUNL

+ 2 additives (Glycerin, Dodecyl-beta-d-maltoside)

GlycerinGOL
DrugBank DB09462within 5 Å only
Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer. Drug annotations from DrugDomain.