ECODEvolutionary Classification of Protein Domains

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PDB 6JLO

X-RAY DIFFRACTION2.40 Å39 chains41 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain aPhotosystem II protein D1view chain

1 domain

e6jloa1(a:11-344)

Chain APhotosystem II protein D1view chain

1 domain

e6jloA1(A:11-344)

Chain bPhotosystem II CP47 reaction center proteinview chain

2 domains

e6jlob1(b:2-328,b:445-504)e6jlob2(b:329-444)

Chain BPhotosystem II CP47 reaction center proteinview chain

2 domains

e6jloB1(B:329-444)e6jloB2(B:2-328,B:445-505)

Chain cPhotosystem II CP43 reaction center proteinview chain

1 domain

e6jloc1(c:19-473)

Chain CPhotosystem II CP43 reaction center proteinview chain

1 domain

e6jloC1(C:23-473)

Chain dPhotosystem II D2 proteinview chain

1 domain

e6jlod1(d:12-352)

Chain DPhotosystem II D2 proteinview chain

1 domain

e6jloD1(D:12-352)

Chain eCytochrome b559 subunit alphaview chain

1 domain

e6jloe1(e:4-84)

Chain ECytochrome b559 subunit alphaview chain

1 domain

e6jloE1(E:4-84)

Chain fCytochrome b559 subunit betaview chain

1 domain

e6jlof1(f:14-45)

Chain FCytochrome b559 subunit betaview chain

1 domain

e6jloF1(F:12-45)

Chain hPhotosystem II reaction center protein Hview chain

1 domain

e6jloh1(h:2-66)

Chain HPhotosystem II reaction center protein Hview chain

1 domain

e6jloH1(H:2-66)

Chain iPhotosystem II reaction center protein Iview chain

1 domain

e6jloi1(i:1-38)

Chain IPhotosystem II reaction center protein Iview chain

1 domain

e6jloI1(I:1-38)

Chain jPhotosystem II reaction center protein Jview chain

1 domain

e6jloj1(j:1-39)

Chain JPhotosystem II reaction center protein Jview chain

1 domain

e6jloJ1(J:2-39)

Chain kPhotosystem II reaction center protein Kview chain

1 domain

e6jlok1(k:10-46)

Chain KPhotosystem II reaction center protein Kview chain

1 domain

e6jloK1(K:10-46)

Chain lPhotosystem II reaction center protein Lview chain

1 domain

e6jlol1(l:1-37)

Chain LPhotosystem II reaction center protein Lview chain

1 domain

e6jloL1(L:1-37)

Chain mPhotosystem II reaction center protein Mview chain

1 domain

e6jlom1(m:1-34)

Chain MPhotosystem II reaction center protein Mview chain

1 domain

e6jloM1(M:1-34)

Chain oPhotosystem II manganese-stabilizing polypeptideview chain

1 domain

e6jloo1(o:4-246)

Chain OPhotosystem II manganese-stabilizing polypeptideview chain

1 domain

e6jloO1(O:4-246)

Chain RPhotosystem II protein Yview chain

1 domain

e6jloR1(R:2-31)

Chain tPhotosystem II reaction center protein Tview chain

1 domain

e6jlot1(t:1-30)

Chain TPhotosystem II reaction center protein Tview chain

1 domain

e6jloT1(T:1-30)

Chain uPhotosystem II 12 kDa extrinsic proteinview chain

1 domain

e6jlou1(u:8-104)

Chain UPhotosystem II 12 kDa extrinsic proteinview chain

1 domain

e6jloU1(U:8-104)

Chain vCytochrome c-550view chain

1 domain

e6jlov1(v:1-137)

Chain VCytochrome c-550view chain

1 domain

e6jloV1(V:1-137)

Chain xPhotosystem II reaction center protein Xview chain

1 domain

e6jlox1(x:2-39)

Chain XPhotosystem II reaction center protein Xview chain

1 domain

e6jloX1(X:2-40)

Chain yPhotosystem II reaction center protein Ycf12view chain

1 domain

e6jloy1(y:18-46)

Chain YPhotosystem II reaction center protein Ycf12view chain

1 domain

e6jloY1(Y:18-46)

Chain zPhotosystem II reaction center protein Zview chain

1 domain

e6jloz1(z:1-62)

Chain ZPhotosystem II reaction center protein Zview chain

1 domain

e6jloZ1(Z:1-62)

All Domains (41)

#	Chain	Domain ID	Range	Family	Classification
1	a	e6jloa1	a:11-344	Photo_RC	5037 → 5037.1 → 5037.1.1
2	A	e6jloA1	A:11-344	Photo_RC	5037 → 5037.1 → 5037.1.1
3	b	e6jlob1	b:2-328,b:445-504	PSII	5075 → 5075.1 → 5075.1.1
4	b	e6jlob2	b:329-444	PSII	3744 → 3744.1 → 3744.1.1
5	B	e6jloB1	B:329-444	PSII	3744 → 3744.1 → 3744.1.1
6	B	e6jloB2	B:2-328,B:445-505	PSII	5075 → 5075.1 → 5075.1.1
7	c	e6jloc1	c:19-473	PSII	5075 → 5075.1 → 5075.1.1
8	C	e6jloC1	C:23-473	PSII	5075 → 5075.1 → 5075.1.1
9	d	e6jlod1	d:12-352	Photo_RC	5037 → 5037.1 → 5037.1.1
10	D	e6jloD1	D:12-352	Photo_RC	5037 → 5037.1 → 5037.1.1
11	e	e6jloe1	e:4-84	Cytochrom_B559,Cytochrom_B559a	5036 → 5036.1 → 5036.1.1
12	E	e6jloE1	E:4-84	Cytochrom_B559,Cytochrom_B559a	5036 → 5036.1 → 5036.1.1
13	f	e6jlof1	f:14-45	Cytochrom_B559	5036 → 5036.1 → 5036.1.1
14	F	e6jloF1	F:12-45	Cytochrom_B559	5036 → 5036.1 → 5036.1.1
15	h	e6jloh1	h:2-66	PsbH	5032 → 5032.1 → 5032.1.1
16	H	e6jloH1	H:2-66	PsbH	5032 → 5032.1 → 5032.1.1
17	i	e6jloi1	i:1-38	PsbI	5035 → 5035.1 → 5035.1.1
18	I	e6jloI1	I:1-38	PsbI	5035 → 5035.1 → 5035.1.1
19	j	e6jloj1	j:1-39	PsbJ	5031 → 5031.1 → 5031.1.1
20	J	e6jloJ1	J:2-39	PsbJ	5031 → 5031.1 → 5031.1.1
21	k	e6jlok1	k:10-46	PsbK	5034 → 5034.1 → 5034.1.1
22	K	e6jloK1	K:10-46	PsbK	5034 → 5034.1 → 5034.1.1
23	l	e6jlol1	l:1-37	PsbL	5030 → 5030.1 → 5030.1.1
24	L	e6jloL1	L:1-37	PsbL	5030 → 5030.1 → 5030.1.1
25	m	e6jlom1	m:1-34	PsbM	5033 → 5033.1 → 5033.1.1
26	M	e6jloM1	M:1-34	PsbM	5033 → 5033.1 → 5033.1.1
27	o	e6jloo1	o:4-246	MSP	5084 → 5084.1 → 5084.1.1
28	O	e6jloO1	O:4-246	MSP	5084 → 5084.1 → 5084.1.1
29	R	e6jloR1	R:2-31	PsbY	6106 → 6106.1 → 6106.1.1
30	t	e6jlot1	t:1-30	PsbT	3390 → 3390.1 → 3390.1.1
31	T	e6jloT1	T:1-30	PsbT	3390 → 3390.1 → 3390.1.1
32	u	e6jlou1	u:8-104	PsbU	102 → 102.1 → 102.1.1
33	U	e6jloU1	U:8-104	PsbU	102 → 102.1 → 102.1.1
34	v	e6jlov1	v:1-137	Cytochrom_C550	107 → 107.1 → 107.1.1
35	V	e6jloV1	V:1-137	Cytochrom_C550	107 → 107.1 → 107.1.1
36	x	e6jlox1	x:2-39	PsbX	3493 → 3493.1 → 3493.1.1
37	X	e6jloX1	X:2-40	PsbX	3493 → 3493.1 → 3493.1.1
38	y	e6jloy1	y:18-46	PSII_Ycf12	3379 → 3379.1 → 3379.1.1
39	Y	e6jloY1	Y:18-46	PSII_Ycf12	3379 → 3379.1 → 3379.1.1
40	z	e6jloz1	z:1-62	Ycf9	5044 → 5044.1 → 5044.1.1
41	Z	e6jloZ1	Z:1-62	Ycf9	5044 → 5044.1 → 5044.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors