ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6tzmA1 - ECOD Domain | ECOD

ECOD/Domains/e6tzmA1

e6tzmA1

UID: 002550893

PDB

Range: A:408-629
PDB: 6TZM chain A(all domains)
UniProt: P43075 (all domains)
Gene: LIG1

Molecule: tRNA ligase

3D Structure

Loading viewer...

Related Domains

Browse other domains in tRNA_lig_kinase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilytRNA_lig_kinase(2004.1.1.284)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-DiphosphateGDP
drugDrugBank DB04315
Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF08303tRNA_lig_kinase

tRNA ligase kinase domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 6TZM RCSB PDB: 6TZM PDBe: 6TZM UniProt: P43075

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure